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kassambara / survminer

Survival Analysis and Visualization
https://rpkgs.datanovia.com/survminer/
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ggsurvplot displaying error #639

Open pmpradhan opened 10 months ago

pmpradhan commented 10 months ago

Expected behavior

To produce survival curve with confidence intervals.

Actual behavior

Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows: 12471, 0, 24942

Steps to reproduce the problem

One year ago, this

surv <- ggsurvplot(

  • kmsurv, data = df,
  • conf.int = TRUE,
  • legend.labs = c("ANTICOAGULANT","ANTIPLATELET", "FIBRINOLYTIC", "SWITCHERS", "WARFARIN"),
  • main = "Survival Plot",
  • xlab = "Time (in days)",
  • ylab = "Survival Probability"
  • ) code used to produce graphs with confidence interval but recently running this code returns error:'Error in data.frame(..., check.names = FALSE) : arguments imply differing number of rows: 12471, 0, 24942 '

Please fix this!!

session_info()

# please paste here the result of
devtools::session_info()
> devtools::session_info()
- Session info -----------------------------------------------------------------------------------
 setting  value
 version  R version 4.2.3 (2023-03-15 ucrt)
 os       Windows Server x64 (build 14393)
 system   x86_64, mingw32
 ui       RStudio
 language (EN)
 collate  English_United States.1252
 ctype    English_United States.1252
 tz       America/Chicago
 date     2024-01-10
 rstudio  2023.06.0+421 Mountain Hydrangea (desktop)
 pandoc   NA

- Packages ---------------------------------------------------------------------------------------
 package     * version date (UTC) lib source
 abind         1.4-5   2016-07-21 [1] CRAN (R 4.2.0)
 backports     1.4.1   2021-12-13 [1] CRAN (R 4.2.0)
 broom         1.0.5   2023-06-09 [1] CRAN (R 4.2.3)
 cachem        1.0.8   2023-05-01 [1] CRAN (R 4.2.3)
 car           3.1-2   2023-03-30 [1] CRAN (R 4.2.3)
 carData       3.0-5   2022-01-06 [1] CRAN (R 4.2.3)
 cli           3.6.1   2023-03-23 [1] CRAN (R 4.2.3)
 colorspace    2.1-0   2023-01-23 [1] CRAN (R 4.2.3)
 data.table    1.14.10 2023-12-08 [1] CRAN (R 4.2.3)
 devtools    * 2.4.5   2022-10-11 [1] CRAN (R 4.2.3)
 digest        0.6.33  2023-07-07 [1] CRAN (R 4.2.3)
 dplyr         1.1.4   2023-11-17 [1] CRAN (R 4.2.3)
 ellipsis      0.3.2   2021-04-29 [1] CRAN (R 4.2.3)
 fansi         1.0.6   2023-12-08 [1] CRAN (R 4.2.3)
 fastmap       1.1.1   2023-02-24 [1] CRAN (R 4.2.3)
 fs            1.6.3   2023-07-20 [1] CRAN (R 4.2.3)
 generics      0.1.3   2022-07-05 [1] CRAN (R 4.2.3)
 ggplot2     * 3.4.4   2023-10-12 [1] CRAN (R 4.2.3)
 ggpubr      * 0.6.0   2023-02-10 [1] CRAN (R 4.2.3)
 ggsignif      0.6.4   2022-10-13 [1] CRAN (R 4.2.3)
 glue          1.6.2   2022-02-24 [1] CRAN (R 4.2.3)
 gridExtra     2.3     2017-09-09 [1] CRAN (R 4.2.3)
 gtable        0.3.4   2023-08-21 [1] CRAN (R 4.2.3)
 htmltools     0.5.7   2023-11-03 [1] CRAN (R 4.2.3)
 htmlwidgets   1.6.4   2023-12-06 [1] CRAN (R 4.2.3)
 httpuv        1.6.13  2023-12-06 [1] CRAN (R 4.2.3)
 km.ci         0.5-6   2022-04-06 [1] CRAN (R 4.2.3)
 KMsurv        0.1-5   2012-12-03 [1] CRAN (R 4.2.0)
 knitr         1.45    2023-10-30 [1] CRAN (R 4.2.3)
 later         1.3.2   2023-12-06 [1] CRAN (R 4.2.3)
 lattice       0.20-45 2021-09-22 [2] CRAN (R 4.2.3)
 lifecycle     1.0.3   2022-10-07 [1] CRAN (R 4.2.3)
 magrittr      2.0.3   2022-03-30 [1] CRAN (R 4.2.3)
 Matrix        1.6-4   2023-11-30 [1] CRAN (R 4.2.3)
 memoise       2.0.1   2021-11-26 [1] CRAN (R 4.2.3)
 mime          0.12    2021-09-28 [1] CRAN (R 4.2.0)
 miniUI        0.1.1.1 2018-05-18 [1] CRAN (R 4.2.3)
 munsell       0.5.0   2018-06-12 [1] CRAN (R 4.2.3)
 pacman        0.5.1   2019-03-11 [1] CRAN (R 4.2.3)
 pillar        1.9.0   2023-03-22 [1] CRAN (R 4.2.3)
 pkgbuild      1.4.3   2023-12-10 [1] CRAN (R 4.2.3)
 pkgconfig     2.0.3   2019-09-22 [1] CRAN (R 4.2.3)
 pkgload       1.3.3   2023-09-22 [1] CRAN (R 4.2.3)
 profvis       0.3.8   2023-05-02 [1] CRAN (R 4.2.3)
 promises      1.2.1   2023-08-10 [1] CRAN (R 4.2.3)
 purrr         1.0.2   2023-08-10 [1] CRAN (R 4.2.3)
 R6            2.5.1   2021-08-19 [1] CRAN (R 4.2.3)
 Rcpp          1.0.11  2023-07-06 [1] CRAN (R 4.2.3)
 remotes       2.4.2.1 2023-07-18 [1] CRAN (R 4.2.3)
 rlang         1.1.2   2023-11-04 [1] CRAN (R 4.2.3)
 rstatix       0.7.2   2023-02-01 [1] CRAN (R 4.2.3)
 rstudioapi    0.15.0  2023-07-07 [1] CRAN (R 4.2.3)
 scales        1.3.0   2023-11-28 [1] CRAN (R 4.2.3)
 sessioninfo   1.2.2   2021-12-06 [1] CRAN (R 4.2.3)
 shiny         1.8.0   2023-11-17 [1] CRAN (R 4.2.3)
 stringi       1.7.12  2023-01-11 [1] CRAN (R 4.2.2)
 stringr       1.5.0   2022-12-02 [1] CRAN (R 4.2.3)
 survival    * 3.5-7   2023-08-14 [1] CRAN (R 4.2.3)
 survminer   * 0.4.9   2021-03-09 [1] CRAN (R 4.2.3)
 survMisc      0.5.6   2022-04-07 [1] CRAN (R 4.2.3)
 tibble        3.2.1   2023-03-20 [1] CRAN (R 4.2.3)
 tidyr         1.3.0   2023-01-24 [1] CRAN (R 4.2.3)
 tidyselect    1.2.0   2022-10-10 [1] CRAN (R 4.2.3)
 urlchecker    1.0.1   2021-11-30 [1] CRAN (R 4.2.3)
 usethis     * 2.2.2   2023-07-06 [1] CRAN (R 4.2.3)
 utf8          1.2.4   2023-10-22 [1] CRAN (R 4.2.3)
 vctrs         0.6.5   2023-12-01 [1] CRAN (R 4.2.3)
 withr         2.5.2   2023-10-30 [1] CRAN (R 4.2.3)
 xfun          0.41    2023-11-01 [1] CRAN (R 4.2.3)
 xtable        1.8-4   2019-04-21 [1] CRAN (R 4.2.3)
 zoo           1.8-12  2023-04-13 [1] CRAN (R 4.2.3)

 [1] C:/Users/pradh012/AppData/Local/R/win-library/4.2
 [2] C:/Program Files/R/R-4.2.3/library