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kassambara / survminer

Survival Analysis and Visualization
https://rpkgs.datanovia.com/survminer/
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`gather_()` was deprecated in tidyr 1.2.0. #656

Closed jkylearmstrong-temple closed 2 weeks ago

jkylearmstrong-temple commented 5 months ago 
> ggcoxdiagnostics(res.cox)
Warning: `gather_()` was deprecated in tidyr 1.2.0.
ℹ Please use `gather()` instead.
ℹ The deprecated feature was likely used in the survminer package.
  Please report the issue at <https://github.com/kassambara/survminer/issues>.
This warning is displayed once every 8 hours.
Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
`geom_smooth()` using formula = 'y ~ x'
Warning: Failed to fit group -1.
Caused by error in `predLoess()`:
BrennanHickson commented 5 months ago

I received the same warning message.

Backtrace: ▆

  1. ├─tibble::tibble(surv_summary(cxsf0, data = complete_cases_all))
  2. │ └─tibble:::tibble_quos(xs, .rows, .name_repair)
  3. │ └─rlang::eval_tidy(xs[[j]], mask)
  4. └─survminer::surv_summary(cxsf0, data = complete_cases_all)
  5. ├─base::cbind(...)
  6. │ └─base::cbind(deparse.level, ...)
  7. │ └─base::data.frame(..., check.names = FALSE)
  8. └─survminer:::.flat(x$surv)
  9. └─tidyr::gather_(x, key_col = "key", value_col = "value", gather_cols = colnames(x))
kassambara commented 2 weeks ago

fixed in #579 and #665