kate-fie / syndirella

Generates and scores synthetically practical elaborations from fragment screens
https://syndirella.readthedocs.io/en/latest/
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Place analogues in chunks by number of atoms added #58

Closed kate-fie closed 1 week ago

kate-fie commented 1 month ago

As of now placement is done for each base compound iteratively where analogues are placed for each base compound one by one. A more flexible approach would be to place X analogues for each base in chunks like:

  1. 0–3 atoms
  2. 4–6 atoms
  3. 7–10 atoms

This approach would allow the stopping of a placement campaign early or stopping in accordance with a strict deadline.