katerinakazantseva / strainy

Graph-based assembly phasing
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Automatically split very long graph unitigs #39

Closed mikolmogorov closed 1 year ago

mikolmogorov commented 1 year ago

Some graphs might have very long sequences (e.g. 1mb+) which take very long to process. One solution might be to split such sequences into ~50kb chunks (make it a parameter) before running metaphase. This should be done automatically as a part of the phase/transform workflows.