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katerinakazantseva / strainy

Graph-based assembly phasing
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Faster pairwise alignment #4

Closed mikolmogorov closed 1 year ago

mikolmogorov commented 2 years ago

Alignment using Bio.Align.PairwiseAligner() is known to be super slow. Need to substitute with something like edlib: https://github.com/Martinsos/edlib

mikolmogorov commented 1 year ago

Implemented edlib.