Some graph unitigs may turn out to be highly repetitive, and the phasing part never finishes on them. For example, in the dataset nano_uni_5, using unpolished metaFlye graph, coverage of edge_208 is 900+.
One way to process this is to downsample reads above 100x coverage. Or maybe above 2 x mean_dataset_coverage?
mikolmogorov
commented
6 months ago
Some graph unitigs may turn out to be highly repetitive, and the phasing part never finishes on them. For example, in the dataset
nano_uni_5, using unpolished metaFlye graph, coverage ofedge_208is 900+.One way to process this is to downsample reads above 100x coverage. Or maybe above 2 x mean_dataset_coverage?