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katholt / RedDog

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samstats step failing #27

Closed prmcadam closed 9 years ago

prmcadam commented 9 years ago

Samstats step is failing for all new samples during a merge run

Error: command failed: sam-stats -A -B /scratch/VR0082/Paul/reddog_merge/temp/10530-05/10530-05.bam > /scratch/VR0082/Paul/reddog_merge/temp/10530-05/10530-05_samStats.txt]

config file at /scratch/VR0082/Paul/RedDog/RedDog_v0_51/large_RedDog_config.py

prmcadam commented 9 years ago

.fastq.gz input files were corrupted.