search

katholt / srst2

Short Read Sequence Typing for Bacterial Pathogens
Other
125 stars 65 forks source link

Added option to report the consensus allele for genes where no exact mat... #10

Closed hdashnow closed 10 years ago

hdashnow commented 10 years ago

...ching allele has been found. Reports consensus allele as closest_allele.variant. Only considers SNP variants, not indels.

hdashnow commented 10 years ago

I've added consensus calling for only new alleles or for all genes.

katholt commented 10 years ago

Updates now merged into master and instructions in readme.