Why are my isolate names appended with a '?' in some cases but not all?

katholt / srst2

Short Read Sequence Typing for Bacterial Pathogens

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Why are my isolate names appended with a '?' in some cases but not all? #65

Closed schultzm closed 8 years ago

schultzm commented 8 years ago

When running the command srst2 --prev_output *_genes__*__results.txt --output xyz Why are some isolate names appended with a '?' in the output table?

katholt commented 8 years ago

Don't know, we have not seen this behaviour. Are you using the latest version, and can you give an example of input files that produce this behaviour please?

rrwick commented 8 years ago

Fixed in this commit: https://github.com/katholt/srst2/commit/dfb470665de6f91683702bdb05a27cea66bc281c