PWSmit
commented
8 years ago downloading rather than cloning version 1.8 contained the right files.. solved. Sorry!
Closed PWSmit closed 8 years ago
PWSmit
commented
8 years ago downloading rather than cloning version 1.8 contained the right files.. solved. Sorry!
stephenturner
commented
8 years ago Should probably reopen this. The installation instructions call for a git clone, and for whatever reason, this script is not tracked/pushed, and build fails.
katholt
commented
8 years ago This occurred because this script was removed from the repo, but still referenced in setup.py. This has now been fixed.
Hi Kat and others,
I tried to install srst2 today and run into some issues which seems to be related to missing file called scores_vs_expected.py. using the git clone command, followed by pip install.
When I copied that file from srst2-0.1.7.zip version and placed in into my directory I got it installed (i.e. it says it got installed). However, the installation is not very successful as, when asking for the current version, it gives out random things (see below).
Could you please direct me to the right version of that file? Many thanks in advance,
Pieter Smit
Traceback (most recent call last): File "/usr/local/bin/srst2", line 9, in
load_entry_point('srst2==0.1.8', 'console_scripts', 'srst2')()
File "/usr/lib/python3/dist-packages/pkg_resources.py", line 351, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File "/usr/lib/python3/dist-packages/pkg_resources.py", line 2363, in load_entry_point
return ep.load()
File "/usr/lib/python3/dist-packages/pkg_resources.py", line 2088, in load
entry = import(self.module_name, globals(),globals(), ['name'])
File "/usr/local/lib/python3.4/dist-packages/srst2/srst2.py", line 306
print "Warning! MLST delimiter is " + delimiter + " but these genes may violate the pattern and cause problems:"
^
SyntaxError: Missing parentheses in call to 'print'
Traceback (most recent call last):
File "/usr/local/bin/srst2", line 9, in
load_entry_point('srst2==0.1.8', 'console_scripts', 'srst2')()
File "/usr/lib/python3/dist-packages/pkg_resources.py", line 351, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File "/usr/lib/python3/dist-packages/pkg_resources.py", line 2363, in load_entry_point
return ep.load()
File "/usr/lib/python3/dist-packages/pkg_resources.py", line 2088, in load
entry = import(self.module_name, globals(),globals(), ['name'])
File "/usr/local/lib/python3.4/dist-packages/srst2/srst2.py", line 306
print "Warning! MLST delimiter is " + delimiter + " but these genes may violate the pattern and cause problems:"
^
SyntaxError: Missing parentheses in call to 'print'