katholt / srst2

Short Read Sequence Typing for Bacterial Pathogens
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Discrepancy between the wget commands and the srst2 command line. #85

Closed Redmar-van-den-Berg closed 6 years ago

Redmar-van-den-Berg commented 7 years ago

Fixed a discrepancy between the wget commands and the srst2 command line in the readme.

I also get a different output from the example, but I did not want to include that in the readme because I'm not sure how relevant the difference is.

$ cat serotypes__genes__EcOH__results.txt
Sample  fliC    wzm wzt wzx wzy
ERR178148   fliC-H31_30*    -   -   wzx-O131_152*   wzy-O131_354
ERR178156   fliC-H33_32 wzm-O9_89*  wzt-O9_103* wzx-Onovel22_575*   wzy-Onovel22_574*
katholt commented 6 years ago

Thanks for fixing this