BEAUti duplicate prefix issue for multi-partition

[GoogleCodeExporter]

load multi-partition and unlink all. The treelikehood section xml is broken 
because id has duplicated prefix but their idref does not have duplication.

<treeLikelihood id="26.26.treeLikelihood" useAmbiguities="false">

<treeLikelihood idref="26.treeLikelihood"/>

Original issue reported on code.google.com by dong.w.xie@gmail.com on 22 Mar 2012 at 11:55

Attachments:

• untitled.xml

[GoogleCodeExporter]

Original comment by ramb...@gmail.com on 24 Mar 2012 at 8:38

• Added labels: Milestone-Release1.7.2, v1.7.1
• Removed labels: 1.7.1

[GoogleCodeExporter]

Issue 617 has been merged into this issue.

Original comment by dong.w.xie@gmail.com on 15 Apr 2012 at 10:28

[GoogleCodeExporter]

Original comment by dong.w.xie@gmail.com on 15 Apr 2012 at 10:29

• Changed state: Fixed

[GoogleCodeExporter]

For anyone else who is running in to this issue, we have been using the 
following shell script to get around it. You need to modify the regular 
expression to match your id, but I thought someone might find this helpful 
until this bug gets fixed.

    #!/bin/bash

    beast <(sed "s/\([Ll][Ss][0-9]\{3\}_\(bin\|dna\)[0-9]\?\).[Ll][Ss][0-9]\{3\}_\(bin\|dna\)[0-9]\?/\1/gi" $1)

Original comment by sebastia...@gmail.com on 24 May 2012 at 9:05