use pre-built singularity images rather than installing singularity manually to speed up build time

kaufman-lab / build_containers

build and deploy kaufman lab singularity containers

GNU Lesser General Public License v2.1

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use pre-built singularity images rather than installing singularity manually to speed up build time #1

Open myoung3 opened 3 years ago

myoung3 commented 3 years ago

https://github.com/marketplace/actions/setup-singularity Waiting on this issue to be solved: https://github.com/eWaterCycle/setup-singularity/issues/4

myoung3 commented 3 years ago

build inside of container instead https://github.com/singularityhub/github-ci/blob/master/.github/workflows/container.yml

myoung3 commented 3 years ago

using a container would be good, but the problem is the r-base container doesn't come with git installed and the singularity container doesn't come with gh installed so it's sort of a wash in terms of simplifying code since you'd need to install both of those respectively.