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kausmees / GenoCAE

Convolutional autoencoder for genotype data
BSD 3-Clause "New" or "Revised" License
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Suggest + volunteer: rename HumanOrigins249_tiny.eigenstratgeno to HumanOrigins249_tiny.bed #13

Closed richelbilderbeek closed 3 years ago

richelbilderbeek commented 3 years ago

Dear GenoCAE maintainer,

Thanks so much for having example files and example code: I find those very useful!

I did find something unexpected, the file extension of HumanOrigins249_tiny.eigenstratgeno: this appears to be a PLINK .bed file, as it follows the same structure as described in the PLINK .bim file format doc. Also, genio (an R package to read PLINK files) cannot read .bed files if they do not have that extension.

I suggest to rename the file to what any PLINK user would expect for a .bed file, which is HumanOrigins249_tiny.bed

I volunteer to do so.

richelbilderbeek commented 3 years ago

Seems like a duplicate of #11 now. I have volunteer to add those funky PLINK files :-)

richelbilderbeek commented 3 years ago

May be fixed with Pull Request #15