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kavli-ntnu / opexebo

Collection of python code for electrophysiology /ɪˌlɛktrəʊfɪzɪˈɒlədʒi/
MIT License
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Border Scores #7

Closed simon-ball closed 4 years ago

simon-ball commented 5 years ago

Border scores generated by opexebo.analysis.borderscore are barely correlated with those produced by +scripts.ScreeningBytemplate from BNT.

A bug is entirely plausible, but the most likely answer is the difference in field detection techniques, since BS is evaluated based on individual fields rather than rateMap. Generate a new test set using the BNT method .+analyses.placeFieldAdaptive (this can be called within Screeningby modifying the BNT parameter file to change p.fieldDetection2D to adaptive)

simon-ball commented 5 years ago

Secondary note: the test data so far is not curated; it's a random mixture of cells. A curated set of cells that do include some strong border cells would be useful (also relevant for #5, #6)