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kbase / collections

Data collections code including a service and loaders
MIT License
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Find gtdb files with pattern vs hardcoding exact names #330

Closed MrCreosote closed 1 year ago

MrCreosote commented 1 year ago

Context: https://github.com/kbase/collections/pull/329#discussion_r1228747088

Instead of looking for an exact file name, use the pattern gtdbtk.*.summary.tsv to find the gtdbtk output files in the tool execution code and the parser. This future proofs us a bit

MrCreosote commented 1 year ago

@Xiangs18 this is done isn't it?

Xiangs18 commented 1 year ago

Hi @MrCreosote, it is merged already!