Description of PR purpose/changes

Update clients to mongo7
Fix linting issues
Update outdated libraries
The latest Dockerfile build contains conda which installs python 3.12.4 so updating deps

Testing Instructions

[ ] My code follows the guidelines at https://sites.google.com/truss.works/kbasetruss/data-upload-project/development
[x] I have performed a self-review of my own code
[x] I have commented my code, particularly in hard-to-understand areas
[ ] I have made corresponding changes to the documentation
[ ] My changes generate no new warnings
[ ] I have added tests that prove my fix is effective or that my feature works
[ ] New and existing unit tests pass locally with my changes
[ ] Any dependent changes have been merged and published in downstream modules
[ ] I have run Black and Flake8 on changed Python Code manually or with git precommit (and the Github Actions build passes)

[ ] Version has been bumped for each release
[ ] Release notes have been updated for each release (and during the merge of feature branches)