Open Tianhao-Gu opened 3 years ago
is_gtf argument in metagenome_to_gff is not effective
is_gtf
metagenome_to_gff
If I read code correctly, for MetaGenome, the export method will return the gff_handle_ref shock file directly and ignore the is_gtf argument.
export
gff_handle_ref
https://github.com/kbaseapps/GenomeFileUtil/blob/master/lib/GenomeFileUtil/core/GenomeToGFF.py#L66
is_gtfargument inmetagenome_to_gffis not effectiveIf I read code correctly, for MetaGenome, the
exportmethod will return thegff_handle_refshock file directly and ignore theis_gtfargument.https://github.com/kbaseapps/GenomeFileUtil/blob/master/lib/GenomeFileUtil/core/GenomeToGFF.py#L66