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kbaseapps
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GenomeFileUtil
MIT License
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back with names
#163
jkbaumohl
closed
5 years ago
0
Changes to see behavior for backup ids
#162
jkbaumohl
closed
5 years ago
0
Changes for GFF upload Mycocosm proteinId issue
#161
jkbaumohl
closed
5 years ago
0
Metagenome gff/fasta upload
#160
slebras
closed
5 years ago
1
Did same fix for GFF for dbxref single : Public708
#159
jkbaumohl
closed
5 years ago
0
Test optimizing
#158
jkbaumohl
closed
5 years ago
1
Add support for metagenomes with precalculated protein fasta
#157
JamesJeffryes
closed
4 years ago
1
Test optimizing
#156
jkbaumohl
closed
5 years ago
0
feature_counts changes
#155
JamesJeffryes
closed
5 years ago
0
Taxonomy options
#154
JamesJeffryes
closed
5 years ago
0
Improvements to GFF parsing
#153
JamesJeffryes
closed
5 years ago
0
Refactoring
#152
JamesJeffryes
closed
5 years ago
0
Don't override genome's genetic code on upgrade
#151
JamesJeffryes
closed
5 years ago
1
Skip unparsable dates and fasta_record features
#150
JamesJeffryes
closed
5 years ago
0
fix extension case sensitive
#149
Tianhao-Gu
closed
5 years ago
1
Make GFF tags into snake case for import
#148
JamesJeffryes
closed
5 years ago
0
new genome_type parameter
#147
JamesJeffryes
closed
5 years ago
2
New org
#146
JamesJeffryes
closed
5 years ago
0
Stop using non-protein_encoding_gene in place of non_coding_features
#145
landml
closed
5 years ago
1
Update specs
#144
JamesJeffryes
closed
5 years ago
0
Sct-1628
#143
JamesJeffryes
closed
5 years ago
0
First Pass of Protein Fasta downloading
#142
jkbaumohl
closed
5 years ago
0
fixes for source_id and upgrading aliases
#141
samseaver
closed
5 years ago
1
SCT-1366: Add new ontologies uploader
#140
JamesJeffryes
closed
5 years ago
0
Updates to warning messages
#139
JamesJeffryes
closed
5 years ago
0
Bugfix
#138
JamesJeffryes
closed
6 years ago
0
Sct 1366: Lookback for GenBank importer
#137
JamesJeffryes
closed
6 years ago
0
Sct-1366: Patch BADSTATUSCODE
#136
JamesJeffryes
closed
6 years ago
0
Fixed db_xref issue in GFF uploader
#135
jkbaumohl
closed
6 years ago
0
Changes for GFF. per James suggestion.
#134
jkbaumohl
closed
6 years ago
0
Added logic to remove dna_sequence from features when the genome is big
#133
jkbaumohl
closed
6 years ago
0
Fixed DB_XREF bug plus tests. Quick util test made.
#132
jkbaumohl
closed
6 years ago
0
Data integrity checks
#131
jkbaumohl
closed
6 years ago
0
Confirming relationships in a genome
#130
jkbaumohl
closed
6 years ago
0
Check uniqueness function
#129
jkbaumohl
closed
6 years ago
0
Search2
#128
JamesJeffryes
closed
6 years ago
0
Gff product name
#127
jkbaumohl
closed
6 years ago
0
Added seq checking for assembly ref passing to GB upload.
#126
jkbaumohl
closed
6 years ago
4
Updating use of attributes for phytozome
#125
samseaver
closed
6 years ago
0
To fix ontology events always being made.
#124
jkbaumohl
closed
6 years ago
3
update
#123
JamesJeffryes
closed
6 years ago
0
Sct 814
#122
JamesJeffryes
closed
6 years ago
0
Genome refactor
#121
JamesJeffryes
closed
6 years ago
0
Added tests for very long features
#120
jkbaumohl
closed
6 years ago
0
Added warnings for GFF gene spoofing.
#119
jkbaumohl
closed
6 years ago
0
Fixing some tests. Adding to the test readme.
#118
jkbaumohl
closed
6 years ago
0
More warnings
#117
jkbaumohl
closed
6 years ago
0
More tests
#116
jkbaumohl
closed
6 years ago
0
Prevent genome downgrade
#115
JamesJeffryes
closed
6 years ago
1
Add data and tests for GFF
#114
landml
closed
6 years ago
0
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