kbaseapps / kb_gtdbtk

GTDB-Tk App
MIT License
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PTV-1904 fix mypy errors #88

Open briehl opened 9 months ago

briehl commented 9 months ago

I'm starting progress on this ticket: https://kbase-jira.atlassian.net/browse/PTV-1904

In reading the README and getting tests started, these use mypy, which is throwing a small pile of errors about some typings not resolving properly. This fixes that without affecting any other code.

I also put in some more canonical usage of the pathlib.Path object which is already there (using path3 = path1 / path2 instead of path3 = os.path.join(path1, path2)).

More minor fixes to come as I dig into the error...