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kbaseapps / kb_gtdbtk

GTDB-Tk App
MIT License
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PTV-1904 fix local tests #92

Open briehl opened 7 months ago

briehl commented 7 months ago

WIP, I think.

This adds a couple fixes.

  1. Possibly (probably?) fixing the actual bug that happens. It includes some extra test data from genome data that triggers the problem.
  2. Adds a test to exercise that. Like the other integration tests, this needs a whole lot of computer to run.
  3. Did some restructuring to get local tests running again. These don't actually run GTDB-tk, but mostly exercise the runner.

Next step = replicate the error by hand, for real, and get the botched output files so they can get tested locally.

This is kind of a Work in Progress, but should be mergeable without error.