This was an attempt to solve PTV-1678 where SRA objects loaded from NCBI are not able to be merged. This fix did not solv the problem, but is enough of a chore to leave this here for anyone with a need to do so in the future.

The SRA toolkit now requires being configured before fastq-dump will run successfully. The only addition needed to the default configuration for this to work is setting a value in /LIBS/GUID. The options are specified via these slash delimited strings. If you need to change a specific option then first run vdb-config -n to print out the options and values to get the correct key.

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kbaseapps / kb_uploadmethods

Updated SRA Toolkit to 2.11.0 #345

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Updating Version and Release Notes (if applicable)