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kbaseattic / assembly

An extensible framework for genome assembly.
MIT License
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find a reference-based assembler and implement it #231

Open levinas opened 10 years ago

sebhtml commented 9 years ago

do you have one in mind ?

levinas commented 9 years ago

@sebhtml Yes, velvet has a module called 'Columbus', which may be the first thing we should implement.

AllPaths-LG has an undocumented option to do that as well. The Broad group uses it internally.