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kbaseattic / assembly

An extensible framework for genome assembly.
MIT License
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add validation on input read length for assemblies involving IDBA #306

Open brettin opened 9 years ago

brettin commented 9 years ago

Recipes involving IDBA should fail sooner, and with an appropriate message when reads are greater than 150bp.

Hi Tom,

I took a look; the three jobs had errors because IDBA was involved in those recipes and failed because > the read length was longer than 150bp. So that’s expected. Other assemblers in those jobs generated > contigs. I’ll check if there’s an update with IDBA.

Fangfang