kbaseattic / assembly

An extensible framework for genome assembly.
MIT License
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Contig support #313

Closed cbun closed 8 years ago

cbun commented 9 years ago

Added support in WASP engine for a contig file type. To be used with recipes/plugins that can use self.data.contigfiles.

Added a contigs_comparerecipe that runs quast on all contig files: arast run --contigs contigs1.fa --contigs2.fa --recipe contigs_compare

Newest version of pymongo uses a different connection constructor. Updated to support that.

cbun commented 8 years ago

@levinas I addressed your comments