kbaseattic / relation_engine_spec

Specifications and config for the KBase Relation Engine
https://kbase.us
MIT License
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Features schema #15

Closed jayrbolton closed 5 years ago

jayrbolton commented 5 years ago

A number of attrs have a "TODO" for the description, so I'll need help on those.

This combines all DNA components (protein coding, non-coding, mrna, etc) into one vertex. I don't know if this is the best strategy. All I know is that there are a lot of overlapping attributes, so thought this may be best. I use the "type" attribute to distinguish among them.

I'm planning to use the "contains" edge to connect genomes to features. I wasn't going to put a workspace reference on these, so we have to traverse to the genome to get the workspace ID.