convert NCBItaxon obo to json and create subset using ROBOT tool

kbaseincubator / KE_KG

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Open realmarcin opened 3 years ago

realmarcin commented 3 years ago

source NCBItaxon obo file from OBOFoundry

use ROBOT to select subgraph for bacteria/archae/viruses

realmarcin commented 3 years ago

@jayrbolton here is a ticket if it helps to track/discuss

jayrbolton commented 3 years ago

Thanks. The source file can be found in /kbase/ke/data/NCBI_Tax. I'll build a small docker container that runs the ROBOT cli for docker03 soon-ish.