kblin ncbi-acc-download issues

kblin / ncbi-acc-download

Download files from NCBI Entrez by accession

Apache License 2.0

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issues

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chore(deps): Bump actions/download-artifact from 3 to 4.1.7 in /.github/workflows

#29 dependabot[bot] opened 3 months ago
0
Automated Retrieval of Neighboring Gene Sequences from NCBI Protein Accessions

#28 chingciripit closed 3 months ago
1
test: set Content-Type header in request mock

#27 bdrung closed 4 months ago
6
Can I use BioSample identifiers?

#26 Michelle-Pena opened 8 months ago
3
Document best use cases versus alternatives

#25 peterjc opened 1 year ago
1
Can't download gff3 files when running in --recursive mode.

#24 ewilbanks closed 4 months ago
1
test suite failure with biopython 1.79

#23 emollier closed 3 years ago
8
Add genomic range and ORF 'correction' option

#22 zdk123 closed 3 years ago
6
running with `--format fasta` creates an empty fa file

#21 orenmn opened 4 years ago
2
NCBI Entrez returned error code 429, are ID(s) [...] valid?

#20 orenmn opened 4 years ago
3
Add genomic range option

#19 zdk123 closed 3 years ago
2
Question - Is it possible to download synthetic sequences (taxid 81077) with ngd

#18 jagos01 closed 4 years ago
2
Add support for API key input

#17 DarianHole closed 4 years ago
4
Accession range support?

#16 peterjc opened 4 years ago
1
syntax error

#15 germant13 closed 4 years ago
4
Retry on failure?

#14 dfornika opened 5 years ago
2
Issue with recursive download

#13 Anto007 opened 5 years ago
15
Download error 400

#12 ganiatgithub opened 5 years ago
2
ncbi_acc_download.errors.DownloadError: Download failed with return code: 400

#11 shimingtan closed 5 years ago
3
Unable to run examples

#10 hrwaik closed 5 years ago
2
Connection broken

#9 shimingt opened 5 years ago
1
Entrez search support?

#8 peterjc opened 6 years ago
3
Print what files you created when using -v mode

#7 tseemann opened 6 years ago
1
GFF3 files with sequence included

#6 tseemann opened 6 years ago
1
The -F gff3 output has no header

#5 tseemann closed 4 months ago
4
Download a GFF file [feature request]

#4 sjackman closed 6 years ago
7
Write to a specified file name without implicit extension

#3 sjackman closed 6 years ago
9
Should it depend on Biopython

#2 sjackman closed 6 years ago
3
Better user-facing messages on invalid IDs

#1 areejalsheikh opened 6 years ago
2