search

kblin / ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers
Apache License 2.0
956 stars 174 forks source link

issue with ncbi-genome-download #226

Closed SrichandanPadhi closed 4 months ago

SrichandanPadhi commented 4 months ago

I am getting the following error with ncbi-genome-download. Please help me finding a solution.

COMMAND: $ ncbi-genome-download --taxids 511145 bacteria ERROR: Traceback (most recent call last): File "/home/srichandanp/miniconda3/envs/genome_analysis/bin/ncbi-genome-download", line 10, in sys.exit(main()) File "/home/srichandanp/miniconda3/envs/genome_analysis/lib/python3.5/site-packages/ncbi_genome_download/main.py", line 26, in main ret = args_download(args) File "/home/srichandanp/miniconda3/envs/genome_analysis/lib/python3.5/site-packages/ncbi_genome_download/core.py", line 174, in args_download return config_download(config) File "/home/srichandanp/miniconda3/envs/genome_analysis/lib/python3.5/site-packages/ncbi_genome_download/core.py", line 193, in config_download download_candidates = select_candidates(config) File "/home/srichandanp/miniconda3/envs/genome_analysis/lib/python3.5/site-packages/ncbi_genome_download/core.py", line 290, in select_candidates for entry in filter_entries(entries, config): File "/home/srichandanp/miniconda3/envs/genome_analysis/lib/python3.5/site-packages/ncbi_genome_download/core.py", line 336, in filter_entries if not config.is_compatible_assembly_accession(entry['assembly_accession']): KeyError: 'assembly_accession'

kblin commented 4 months ago

This was fixed in ncbi-genome-download 0.3.2, released about a year ago, please update.