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kblin / ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers
Apache License 2.0
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file type requested not found in NCBI #232

Open mvalvano opened 3 months ago

mvalvano commented 3 months ago

I am trying to download protein fast files from complete genomes My code is:

% ncbi-genome-download -s genbank bacteria -l complete -F protein-fasta -g "Enterobacter" -o /Users/mvalvano/ ncbi_genomes/enterobacter-faa --flat-output -P -p 4

I get the errors below. It looks that if finds something but there is no file with the requested structure.

ERROR: No entry for file ending in '_protein.faa.gz' ERROR: No entry for file ending in '_protein.faa.gz' ERROR: No entry for file ending in '_protein.faa.gz

What should I do? Thanks