mqmscan() seems to skip over the X chromosome completely, without saying anything. It should give a warning, and this should be mentioned in the documentation.
If a cross consists of only the X chromosome, mqmscan() gives an error, as the output will be NULL and you can't set the class for NULL.
mqmscan()seems to skip over the X chromosome completely, without saying anything. It should give a warning, and this should be mentioned in the documentation.mqmscan()gives an error, as the output will be NULL and you can't set the class for NULL.