Amphora2 breaks contig names on first whitespace, whereas Bbmap does not. (Can't remember what Barrnap does.) Megahit assembler produces contig names with spaces.
This leads to contig/scaffold names not being recognized when trying to import annotations as gbt object.
Either "fix" the covstats file from Bbmap, or split contig names on first whitespace when importing gbt object.
Amphora2 breaks contig names on first whitespace, whereas Bbmap does not. (Can't remember what Barrnap does.) Megahit assembler produces contig names with spaces.
This leads to contig/scaffold names not being recognized when trying to import annotations as gbt object.
Either "fix" the covstats file from Bbmap, or split contig names on first whitespace when importing gbt object.