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kcleal / dysgu

Toolkit for calling structural variants using short or long reads
MIT License
88 stars 10 forks source link

Error while trying to clone the repository #49

Closed mkyriak closed 1 year ago

mkyriak commented 1 year ago

Hello, while I was trying to clone your repository (using git clone --recursive https://github.com/kcleal/dysgu.git), I got the following error:

fatal: remote error: upload-pack: not our ref b341a74e355bcf4ff295307ed22d1f4905facb11 fatal: Fetched in submodule path 'dysgu/htslib', but it did not contain b341a74e355bcf4ff295307ed22d1f4905facb11. Direct fetching of that commit failed. fatal:

kcleal commented 1 year ago

Thanks for raising this, it looks like --recursive does not fetch htslib properly. You can download from the release though instead e.g. wget https://github.com/kcleal/dysgu/releases/tag/v1.3.12

mkyriak commented 1 year ago

Thank you @kcleal , indeed, it worked after downloading v1.3.12.tar.gz (downloaded using this command: wget https://github.com/kcleal/dysgu/archive/refs/tags/v1.3.12.tar.gz) and following the installation instructions described in your documentation.