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kdahlquist / GRNmap

Gene Regulatory Network modeling and parameter estimation
BSD 3-Clause "New" or "Revised" License
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Checker to validate expression worksheets #232

Open kdahlquist opened 8 years ago

kdahlquist commented 8 years ago
  1. Write tests for current data structure.
  2. When reading the expression worksheets:
    • if there are no expression values for a gene at a particular timepoint, abort the modeling and kick it back to the user
    • if there is only a single value for a gene at a particluar timepoint, allow the modeling to continue, but don't compute a standard deviation for that gene and timepoint.
trixr4kdz commented 7 years ago

So far, there are only 2 tests for checking whether we encounter an errorFlag (for the first case described in the comment above) or a warningFlag (for the second case). We have yet to implement aborting the simulations.

trixr4kdz commented 7 years ago

I referenced this issue in the v1.6 draft release since the tasks are, technically, done. The only task left is to actually call the compressMissingData function.