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kdahlquist / GRNmap

Gene Regulatory Network modeling and parameter estimation
BSD 3-Clause "New" or "Revised" License
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Model Runs with Variable Inclusion of Strain Data #278

Open bklein7 opened 7 years ago

bklein7 commented 7 years ago

The model runs performed using the 5, "15"-gene networks #265 will be repeated with variable inclusion of strain data.

Runs for each of the networks will be performed iteratively, starting with only data from one strain and progressively adding strains until all are included in the input sheet.

kdahlquist commented 7 years ago

This is going to be done as part of the testing associated with #323.

kdahlquist commented 7 years ago

This was done with the L-curve runs #351.

kdahlquist commented 7 years ago

So some of this was done in the L-curve runs of #38. However, not all permutations were tried. We are going to wait a little for the GRNmap coding team @cazinge and @jtorre39 to fix the minLSE computation before doing any more L-curve runs, but once that is done, we'll complete the permutations.

We can use the multicore computer in @kdahlquist's office to do multiple runs at once.