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kdahlquist / GRNmap

Gene Regulatory Network modeling and parameter estimation
BSD 3-Clause "New" or "Revised" License
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Create a "28"-Gene Network Based on the 6, "15"-Gene Networks #281

Closed bklein7 closed 7 years ago

bklein7 commented 7 years ago

During the Data Analysis Team meeting on Monday, November 7, @bengfitzpatrick and @kdahlquist suggested that a giant "28"-gene network encompassing all genes involved in the 5 "15"-gene networks should be created. Such a network could give us a reference point to use and perhaps even be used for hypothesis testing.

A list of the genes necessary to create this network can be found in the last worksheet of this Excel file.

kdahlquist commented 7 years ago

@bklein7 is close to having done this after compiling the weight data for the 6 db-derived networks. He could easily make an unweighted SIF file from that and create the visualization of the unweighted network in GRNsight. I don't think it will be a fair comparison, though, to run this large of a network in GRNmap itself, although the visualization might be useful.

kdahlquist commented 7 years ago

Labeling this as "backlog" and closing since we won't be doing this in the Spring 2017 semester.