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kdkorthauer / dmrseq

R package for Inference of differentially methylated regions (DMRs) from bisulfite sequencing
MIT License
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distribution of coverage #40

Closed priyatamapandey closed 3 years ago

priyatamapandey commented 4 years ago

Hi , I am using plotEmpiricalDistribution function and it did not generate all the curves for my all the samples. I am attaching the graph here. You can see here it plotted only three curves for the second group and did not plot the distribution from D3 to D9 samples.

Screen Shot 2020-05-02 at 2 47 06 PM

Also, Can I plot the sample wise methylation distribution too? As the above one is for the coverage.

Thank you for any help, Priya

kdkorthauer commented 3 years ago

Hi Priya,

I apologize that I somehow overlooked this open issue.

The missing lines were due to a limitation on the number of unique line types available - I have just pushed a fix that will plot all samples as the same line type if there are more samples than the number of line types. Apologies for the delay.

For your second question - yes, the default type="M" will plot the methylation values.