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kdorheim / MENDplus

MEND R package and materials for the mechanistic reaction modeling analysis.
https://kdorheim.github.io/MENDplus/
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References #1

Open kdorheim opened 4 years ago

kdorheim commented 4 years ago

@jianqiuz this might be a good place to start a shared list of references

jianqiuz commented 4 years ago

Microbial community-level regulation explains soil carbon responses to long-term litter manipulations.

Summary: This paper compared popular microbial models of SOM decomposition. It provides explicit information of model formulation and parameters.

Georgious 2017 NComm microbial carbon model .pdf

Georgious 2017 NComm correction.pdf

jianqiuz commented 4 years ago

Model structures amplify uncertainty in predicted soil carbon responses to climate change

Summary: Bayesian inference analysis quantifying model structure and parametrization uncertainties. Century model (empirical), MIMICS (microbial model with reverse MM kinetics), CLM4.5 bgc (empirical with multiple depths)

Shi 2018 NComm model structure and uncertainties.pdf

jianqiuz commented 4 years ago

Individual model descriptions: MEND model ismej.pdf MEMS carbon model.pdf berkeley model.pdf Abramoff2018_Article_TheMillennialModelInSearchOfMe.pdf Debjani GCB.pdf

jianqiuz commented 4 years ago

Math heavy description of reaction kinetics from Jinyun. He described the mathematical relationship between different kinetics, including MM, RMM and ECA.

Reaction kinetics.pdf