kdorheim / MENDplus

MEND R package and materials for the mechanistic reaction modeling analysis.

https://kdorheim.github.io/MENDplus/

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Mcmc dev #10

Closed kdorheim closed 3 years ago

kdorheim commented 4 years ago

@jianqiuz here is the mcmc setup we spoke about last week, I would really appreciate any feedback you may have! Ugh unfortunately it looks like my mcmc demo is going to be formatted a tad funky but check out https://rpubs.com/kdorheim/643899 and see if that is a good starting place.

Thanks!!

jianqiuz commented 4 years ago

@kdorheim I am still behind my work plan this week. Looks like I won't be able to get everything tested before Friday

codecov-commenter commented 3 years ago

Codecov Report

Merging #10 into master will decrease coverage by 3.92%. The diff coverage is 89.74%.

@@             Coverage Diff             @@
##            master      #10      +/-   ##
===========================================
- Coverage   100.00%   96.07%   -3.93%     
===========================================
  Files            3        4       +1     
  Lines           63      102      +39     
===========================================
+ Hits            63       98      +35     
- Misses           0        4       +4

Impacted Files	Coverage Δ
R/mcmc_functions.R	`89.74% <89.74%> (ø)`

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kdorheim commented 3 years ago

@jianqiuz it took longer than expected but does this work now?

https://rpubs.com/kdorheim/643899

jianqiuz commented 3 years ago

@jianqiuz here is the mcmc setup we spoke about last week, I would really appreciate any feedback you may have! Ugh unfortunately it looks like my mcmc demo is going to be formatted a tad funky but check out https://rpubs.com/kdorheim/643899 and see if that is a good starting place.

Thanks!!

Error in assert_that(is.data.frame(comp)) : could not find function "assert_that"

Also in your link, there's no command for running metrop in section 3