Missing file 'High_Quality_Cells_TPM_Information.csv' in Parameter_Estimation

kdzimm / PseudoreplicationPaper

Code used to carry out parameter estimation, correlation estimation, type 1 error analysis, and power analysis for our "Pseudoreplication in Single-Cell" study

MIT License

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Missing file 'High_Quality_Cells_TPM_Information.csv' in Parameter_Estimation #5

Open mingyudu opened 1 year ago

mingyudu commented 1 year ago

Hi,

I'm trying to run the code in Parameter_Estimation folder. But it seems I can not find this file required in the code: 'C:\Users\kdzimmer\Documents\Langefeld group\Studies\Dissertation\scRNAseq\Pseudoreplication\Simulations\Empirical Distributions\High_Quality_Cells_TPM_Information.csv'

Could you please share this file? Or could you please explain how you generated this file?

Thanks!

kdzimm commented 1 year ago

@mingyudu I apologize the file is not present, it is bigger than github allows uploads for so I cannot upload it. If you install my R package you will be able to do these steps with the default data which is a part of the package itself: https://github.com/kdzimm/hierarchicell