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keiserlab / plaquebox-paper

Repo for Tang et al, bioRxiv 454793 (2018)
MIT License
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CSVs folder and excel files contents issues #5

Open kwameyeboah3 opened 3 months ago

kwameyeboah3 commented 3 months ago

I have being able to run notebooks 1.1, 1.2 and 1.3 successfully, but i am having issues with 2.1, i wanted to know how the CSVs directory and the excel files within the CSVs directory were generated, since the error message i receive when i run notebook 2.1 says, no such file directory found for both "train" and "dev".

Thank you. Screenshot from 2024-03-19 16-51-46 Screenshot from 2024-03-19 16-51-57 Screenshot from 2024-03-19 16-52-03

mjke commented 3 months ago

@ZiqiTang919 could you take a look?

ZiqiTang919 commented 3 months ago

Hi @kwameyeboah3 please find the train.csv and dev.csv here in the data/CSVs folder. The files in this folder are ground truth labels for the dataset annotated by an expert neuropathologist.

kwameyeboah3 commented 3 months ago

Thank you for the response. So were the excel files in the CSVs folder generated by the notebook codes in 1.3 or 2.1 or they were just imported from somewhere into the into the CSVs folder.

Thank you.

ZiqiTang919 commented 3 months ago

They were imported.