keithforest ea-utils issues

keithforest / ea-utils

Automatically exported from code.google.com/p/ea-utils

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Patches for porting ea-utils to other POSIX platforms + warnings clean-up

#40 GoogleCodeExporter opened 9 years ago
1
"fastq-mcf has stopped working"

#39 GoogleCodeExporter opened 9 years ago
0
compilation error because sparsehash/sparse_hash_map is not found

#38 GoogleCodeExporter opened 9 years ago
1
gtf2bed wrong output.

#37 GoogleCodeExporter opened 9 years ago
1
error message: "fastq-mcf has stopped working"

#36 GoogleCodeExporter closed 9 years ago
4
fastq-mcf not working correctly on ubuntu 14.04

#35 GoogleCodeExporter closed 9 years ago
9
Wrong number (/ counter / calculation) in summary statistics of fastq-mcf

#34 GoogleCodeExporter closed 9 years ago
2
Giant FASTQ support in stats

#33 GoogleCodeExporter opened 9 years ago
3
Compilation on Mac

#32 GoogleCodeExporter opened 9 years ago
1
fastq-multx supporting sequence in header

#31 GoogleCodeExporter closed 9 years ago
1
fastq-multx when barcode is in header between # and / symbols?

#30 GoogleCodeExporter closed 9 years ago
7
Limit on the number of files it can handle

#29 GoogleCodeExporter closed 9 years ago
1
The gtf2bed script generate bed with wrong chrStart and chrEnd coordinates for plus strand

#28 GoogleCodeExporter closed 9 years ago
4
fastq-mcf: invalid adapter file ==> Floating point exception

#27 GoogleCodeExporter opened 9 years ago
1
Incorrect total reads when using FIFO

#26 GoogleCodeExporter closed 9 years ago
2
sam-stats doesn't support -o and -O option

#25 GoogleCodeExporter opened 9 years ago
3
fastq-mcf: Allow merging multiple FASTQ input files to one (or two in case of paired-end) cleaned fastq file

#24 GoogleCodeExporter closed 9 years ago
4
Add "make clean" target to Makefile

#23 GoogleCodeExporter closed 9 years ago
3
--max-ns 0 does not seem to work, still getting reads with Ns

#22 GoogleCodeExporter closed 9 years ago
6
sam-stats fails to properly deduce unmapped reads and snp (ins/del) rate

#21 GoogleCodeExporter closed 9 years ago
6
sam-stats is not installed

#20 GoogleCodeExporter closed 9 years ago
1
ea-utils621-win fastq-stats and fastq-mcf not working

#19 GoogleCodeExporter closed 9 years ago
3
make: *** [fastq-mcf] Error 1

#18 GoogleCodeExporter closed 9 years ago
13
make install failing because it can't find gsl-randist.h

#17 GoogleCodeExporter closed 9 years ago
4
issue with gtf2bed

#16 GoogleCodeExporter closed 9 years ago
2
The N-percent maximum difference

#15 GoogleCodeExporter closed 9 years ago
2
Inconsistant fastq-mcf between servers

#14 GoogleCodeExporter closed 9 years ago
8
Has anyone been able to compile EA utils on Moutain Lion?

#13 GoogleCodeExporter closed 9 years ago
9
fastq-mcf does not process all fasta entries

#12 GoogleCodeExporter closed 9 years ago
10
fastq-multx

#11 GoogleCodeExporter closed 9 years ago
2
fastq-stats make error: google/sparse_hash_map: No such file or directory

#10 GoogleCodeExporter closed 9 years ago
15
mapped bases didn't output

#9 GoogleCodeExporter closed 9 years ago
4
sam-stats not compiled by make

#8 GoogleCodeExporter closed 9 years ago
2
no ea-utils.spex file

#7 GoogleCodeExporter closed 9 years ago
2
Error opening file 'GFI-410.fastq': Value too large for defined data type

#6 GoogleCodeExporter closed 9 years ago
7
fastq-mcf doesn't work on Lion

#5 GoogleCodeExporter closed 9 years ago
12
fastq-join does not work on set of (fastq-mcf) trimmed seqs, although it works perfectly for each seq seperately

#4 GoogleCodeExporter closed 9 years ago
6
GNU 'getline' function causes g++ to fail on OS X

#3 GoogleCodeExporter closed 9 years ago
16
Odd adapter parsing

#2 GoogleCodeExporter closed 9 years ago
10
fastq-mcf doesn't clip... even if it finds things to clip

#1 GoogleCodeExporter closed 9 years ago
0