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planemo --galaxy_root /opt/galaxy/galaxy-app/ t command #2

Closed mjko1210 closed 9 years ago

mjko1210 commented 9 years ago

It didn't work when 't' was after the galaxy_root. It worked with 'planemo t --galaxy_root=/path/to/galaxy'. Also, my galaxy_root was '/opt/galaxy/galaxy-app/' instead of '/opt/galaxy'. I had to find the directory where run_tests.sh exists.

kellrott commented 9 years ago

Is this still a bug? I know @jmchilton was fixing some things in the image.

jmchilton commented 9 years ago

@kellrott the recipe now builds with a pre-specified root (https://github.com/galaxyproject/planemo-machine/commit/8cc5c95b5a4a2b9db882f82a28cda9e306150a0d). I think we would need to build a GCE image, etc... for this to be propagated because I believe I added this after the latest build.

kellrott commented 9 years ago

We need to push a new image to take care of issue fixed in https://github.com/galaxyproject/galaxy/pull/45 I've added some text about updating by creating a new VM to the docs. But that section will probably need a bit more text.

kellrott commented 9 years ago

The new image has been pushed and docs about how to do an update have been added