@jgockley62 I decoupled the code to clean and the meat of the counts normalization workflow (kelshmo/sage-seqr) so that the workflow is more reproducible.
Here I have all the scripts to prep the metadata and counts. I added a config.yml to help distinguish the inputs. I'm mainly hoping you can assess the readability of using a config file. It is still kind of hacky :)
kelshmo
commented
4 years ago
@jgockley62 I decoupled the code to clean and the meat of the counts normalization workflow (kelshmo/sage-seqr) so that the workflow is more reproducible.
Here I have all the scripts to prep the metadata and counts. I added a
config.ymlto help distinguish the inputs. I'm mainly hoping you can assess the readability of using a config file. It is still kind of hacky :)