kenchen / breakdancer

SV detection from paired end reads mapping
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updated error checking and code (no differences in output) #2

Open sakoht opened 12 years ago

sakoht commented 12 years ago

Hey Ken,

The version of breakdancer taged as 1.3.6 in the TGI fork has error checks, and a bunch of cosmetic stuff like switch to standard libraries for some of the functionality, removal of duplicate code, removal of very old commented-out code.

We're getting the same results as with the old 1.3.5 (which has some scoring changes you talked with Travis about from 1.2). I was hoping you'd take a look at it though for possible problems or other comments.

I'm going to send a regular email too. Hope things are well at MD Anderson!

Best, Scott