ukb_gen_samples_to_remove does not exist?

[ghost]

Hello,

The ukbtools manual https://kenhanscombe.github.io/ukbtools/ describes the function ukb_gen_samples_to_remove

However when I try to use it, I get the follwoing error: Error in ukb_gen_samples_to_remove(my_relatedness_data, ukb_with_data = pheno$anxiety_self) : could not find function "ukb_gen_samples_to_remove"

Other functions such as ukb_gen_rel_count work fine, though. I've re-installed ukbtools (just in case it was using an older version) but still not working.

Thanks, J

[kenhanscombe]

Hi J,

That's odd. You've definitely got ukbtools v0.11.0 installed? If you look at help(package="ukbtools") what version do you see? If v0.11.0, is ukb_gen_samples_to_remove not listed? Or type ukbtools::ukb_gen_s and tab autocomplete – nothing still? Let me know what you see.

Btw, not that this will give you a could not find function error, but ukb_with_data should be a "character vector of ukb eids with data on the phenotype of interest".

All the best,

Ken

[ghost]

Hi Ken,

Ok, I've double checked and it was the ukbtools v0.10.0 version. I've removed that one and downloaded the new one: Now it is working fine. Thank you!

Best wishes, J

[kenhanscombe]

Thanks, J.