Tweaks to plotting functions

kenkellner / jagsUI

R package to Run JAGS (Just Another Gibbs Sampler) analyses from within R

https://kenkellner.github.io/jagsUI/

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Tweaks to plotting functions #35

Closed mikemeredith closed 4 years ago

mikemeredith commented 4 years ago

args list now has ask=NULL but same behaviour. traceplot and densityplot do not touch par(mfrow...) when per_plot=1. Only par settings which have been changes are restored.

Ran the example in shinyjags and plots seem to be well-behaved.

mikemeredith commented 4 years ago

Latest commit has several changes:

Fixed: plotting functions failed with only one chain; replaced loop to plot lines with matplot.
plot.jagsUI was "ask"ing when number of plots == plots per page.
densityplot uses same bandwidth for all chains.
densityplot attempts to detect parameters constrained to be non-negative or in {0, 1} and plots them truncated appropriately.

kenkellner commented 4 years ago

Thanks Mike. Sorry for the delay, the failed tests are due to very small changes in plot appearance that I'll fix soon.