Open bwlang opened 4 years ago
Hi Brad,
This was because we had assumed that the distance between consecutive "valid" minimsers (required for one of the steps) is less than 65535 (maximum limit of unsigned int 16). However, the message printed when the assumption failed was showing (mistakenly) a different limit (unsigned int 32). Now, we have fixed that assumption in the Release v1.0.2; distance in your data-set can now be handled. Hope that the rest of the run is smooth on your data-set.
I ran hypo like this (now with correct input):
hypo -d $HOME/deer_assemblies/releases/v02.1/ovi_v02.1.fasta \ -r @illumina_reads.fofn \ -b $HOME/deer_assemblies/releases/v02.1/alignments/ovi_v02.1.combined.bam \ -B $HOME/deer_assemblies/releases/v02.1/alignments/ont/deer_ont_v02.1.bam \ -c 80 -s 2.4g -p 30 -t 16 -i