Closed snubrecn closed 5 years ago
Have you tried directly installing h5py? http://docs.h5py.org/en/latest/build.html
Try running pip install h5py
If that fails then you may also need libhdf5 :)
solved problems by first installing libhdf5 and then installing h5py
sudo apt-get install libhdf5
sudo pip install h5py
thanks to both of youI got the problem while I adopt acenewgate's opinion, but it's not matter. The following solve my problem. (My environment is ubuntu 14.04)
sudo pip install cython
sudo apt-get install libhdf5-dev
sudo pip install h5py
Same issue with keras 1.0.7 (didn't happen with 1.0.5) on Mac OSX El Capitan, just had to manually add h5py
via pip. I didn't get prompted for either Cython
or having a missing libhdf5
you can only type: sudo apt-get install python-h5py
pip install h5py pip install cython
solved my problem in Windows 10
Same problem on Debian and python2
mportError:
save_model
requires h5py.
I recently had the same problem... I was executing a python script from a bash file... I used python3 , on which I didn't have h5py installed.
pip3 install h5py
solved my problem.
I can run h5py tests but Keras still gives me errors. Any ideas on what could help?
Update 1: Restarting jupyter notebook/ restarting my computer fixed it.
@krishnadusad after pip3 install h5py
restarting the jupyter notebook solves the problem.
pip install h5py
worked well for me
Can't reproduce this issue with Keras (2.0.5) and Python 3.6.1
@vmalyi I dont know how, but it fixed for me :)
On windows 10, I executed
pip install h5py
pip install cython
But I still get the same error.
I tried to import h5py directly and test it, then I get this error:
>>> import h5py
Traceback (most recent call last):
File "<stdin>", line 1, in <module>
File "C:\Users\Gautam\Anaconda2\envs\dlwin36\lib\site-packages\h5py\__init__.py", line 34, in <module>
from ._conv import register_converters as _register_converters
File "h5py\h5r.pxd", line 21, in init h5py._conv (C:\Minonda\conda-bld\h5py_1496869654914\work\h5py\_conv.c:7550)
File "h5py\_objects.pxd", line 12, in init h5py.h5r (C:\Minonda\conda-bld\h5py_1496869654914\work\h5py\h5r.c:3236)
File "h5py\_objects.pyx", line 1, in init h5py._objects (C:\Minonda\conda-bld\h5py_1496869654914\work\h5py\_objects.c:7762)
ImportError: DLL load failed: The specified procedure could not be found.
UPDATE: ok....so I uninstalled h5py and then reinstalled it and restarted anaconda. Now its working!!!
I had this issue when both pip and conda had somehow ended up with different h5py versions. Removing it from pip entirely (only keeping it for conda), solved this issue. For the record, I kept libhdf5
and python-h5py
.
In Jupyter, I didn't want to restart my kernel after !pip install h5py
(because I wanted to save that model!). This allowed me to continue without restarting:
from importlib import reload
reload(keras.models)
Update for Python 2.7 users: reload
is a built-in so you don’t need to import it before calling it.
@colllin I try to do the same, but I get "ImportError: cannot import name reload". I am using Python 2.7 and I have installed h5py, now trying to save models without restarting kernel.
@colllin It is solved. Actually, I did not need to import reload (it was imported). so, I just ran reload(keras.models) and then I could save my models.
sudo apt-get install python-h5py
for keras 2.1.2 running on mac use:
pip install h5py
just for me after restarting the computer
it worked for me when i Install the h5py package by using conda, and restart the Jupyter notebook.
just to summarize, you need to install:
pip install h5py
If it does not help, please restart your jupyther notebook or computer.
In win10, just excute the command: pip install h5py.
I am able to import h5Py in Anaconda prompt and ipython but it doesnt work in Spyder. Not able to figure out what might be going wrong. I have python 3.6.4 on windows 7 64 bit machine.
Have you checked to see if h5py is in your site-packages dir? I ran into this problem with tensorflow using Jupyter, until I realised conda had installed into a different env (called tfdeeplearning).
You can check where your /site-packages dir is with following code: import sys sys.path
By default conda will install into its lib dir, e.g: ~/anacoda3/lib (which is generally used by ipython on cmd line). In the case of tensorflow the path was ~/anaconda3/envs/tfdeeplearning. I wonder if there is something similar for spyder.
If this is the case you can install into a specific env location as follows:
conda install -n
In my case the following fixed the problem: conda install -n tfdeeplearning h5py
I am running OSX 10.13, but I expect it could be similar in Windows.
This issue is happening because of different version of keras and h5py.
Steps to solve
Remove "h5py" if you already installed
pip uninstall h5py
Remove keras
pip uninstall keras
3 . Now, Install keras, This will install updated and same version of keras and h5py
pip install keras
Nothing helps. I have
h5py==2.8.0
html5lib==0.9999999
keras==2.1.6
I installed libhdf5-dev
and python-h5py
still can't load.
code$ dpkg -s libhdf5-dev
Package: libhdf5-dev
Status: install ok installed
Priority: optional
Section: libdevel
Installed-Size: 29771
Maintainer: Ubuntu Developers <ubuntu-devel-discuss@lists.ubuntu.com>
Architecture: amd64
Source: hdf5
Version: 1.8.16+docs-4ubuntu1
Replaces: libhdf5-serial-dev (<< 1.8.12-9~)
Provides: libhdf5-serial-dev
Depends: libhdf5-10 (= 1.8.16+docs-4ubuntu1), zlib1g-dev, libjpeg-dev, libaec-dev, hdf5-helpers, libhdf5-cpp-11 (= 1.8.16+docs-4ubuntu1)
Suggests: libhdf5-doc
Breaks: libhdf5-serial-dev (<< 1.8.12-9~)
Description: Hierarchical Data Format 5 (HDF5) - development files - serial version
HDF5 is a file format and library for storing scientific data.
HDF5 was designed and implemented to address the deficiencies of
HDF4.x. It has a more powerful and flexible data model, supports
files larger than 2 GB, and supports parallel I/O.
.
This package contains development files for serial platforms.
Homepage: http://hdfgroup.org/HDF5/
Original-Maintainer: Debian GIS Project <pkg-grass-devel@lists.alioth.debian.org>
@iamtodor
maybe you should try it in your workspace.
In my case, I tried pip install h5py
in anaconda prompt. But it still error in Tensorflow Spyder.
So i add h5py in tensorflow by following, then it works.
activate tensorflow
pip install h5py
Closing as this is resolved
Just for your information. I am using Raspberry pi (Raspbian Stretch) when I have the similar issue showing that keras can not load module h5py
By doing the following solved my problem:
sudo apt-get install libhdf5-dev
@wt-huang please close this issue, we're repeating the same thing over and over.
I tried all the solutions above, it yet doesn't work well. I hope someone would like to help me. My environement is Anocada(python3.6.3). The following is the detail error in the xshell(ubuntu serve)
Error in sys.excepthook:
Traceback (most recent call last):
File "/usr/lib/python3/dist-packages/apport_python_hook.py", line 63, in apport_excepthook
from apport.fileutils import likely_packaged, get_recent_crashes
File "/usr/lib/python3/dist-packages/apport/init.py", line 5, in
Original exception was:
Traceback (most recent call last):
File "
On windows 10, I executed
pip install h5py pip install cython
But I still get the same error.
I tried to import h5py directly and test it, then I get this error:
>>> import h5py Traceback (most recent call last): File "<stdin>", line 1, in <module> File "C:\Users\Gautam\Anaconda2\envs\dlwin36\lib\site-packages\h5py\__init__.py", line 34, in <module> from ._conv import register_converters as _register_converters File "h5py\h5r.pxd", line 21, in init h5py._conv (C:\Minonda\conda-bld\h5py_1496869654914\work\h5py\_conv.c:7550) File "h5py\_objects.pxd", line 12, in init h5py.h5r (C:\Minonda\conda-bld\h5py_1496869654914\work\h5py\h5r.c:3236) File "h5py\_objects.pyx", line 1, in init h5py._objects (C:\Minonda\conda-bld\h5py_1496869654914\work\h5py\_objects.c:7762) ImportError: DLL load failed: The specified procedure could not be found.
UPDATE: ok....so I uninstalled h5py and then reinstalled it and restarted anaconda. Now its working!!!
I have win 10 as well, uninstalling h5py and re-installing worked totally for me :)
pip3 install h5py is ok
您好,我已经收到邮件。
on Ubuntu 14.04.5 LTS
installed keras from scratch as below :
sudo pip install keras
however, it didn't work properly, I remembered it was a scipy problem so I installed scipy and again tried to install keras by the same command :
sudo pip install keras
but I only got these messages :and on the terminal by typing "python" I tried to import Sequential from keras.models only to check if keras was installed properly but got theses errors :
Originally, the error occured when importing module backend so I upgraded my tensorflow and after that the above errors occured. (I edited the home./keras/keras.json to change the backend from theano to tensorflow)
I installed anaconda just because it is equipped with many useful python packages but it didn't work for this problem.
What should I do?