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kermitt2 / grobid

A machine learning software for extracting information from scholarly documents
https://grobid.readthedocs.io
Apache License 2.0
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Misclassified tables and/or figures maybe tossed incorrectly #1206

Open lfoppiano opened 2 days ago

lfoppiano commented 2 days ago

I have been reported a few cases of text disappearing from the fulltext.

I've identified two issues related to figures and tables.

First case, where paragraphs are misclassified as tables, by the fulltext model: 

sample  sample  s   sa  sam samp    e   le  ple mple    BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <paragraph>
lysates lysates l   ly  lys lysa    s   es  tes ates    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <paragraph>
(   (   (   (   (   (   (   (   (   (   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   OPENBRACKET 9   2   0   NUMBER  0   0   I-<citation_marker>
1   1   1   1   1   1   1   1   1   1   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    1   NOPUNCT 9   2   0   NUMBER  1   0   <table>
/   /   /   /   /   /   /   /   /   /   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   NOPUNCT 9   2   0   NUMBER  0   0   <table>
5000    5000    5   50  500 5000    0   00  000 5000    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   2   0   NUMBER  0   0   <table>
of  of  o   of  of  of  f   of  of  of  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <table>
stock   stock   s   st  sto stoc    k   ck  ock tock    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <table>
solution    solution    s   so  sol solu    n   on  ion tion    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <table>
mix mix m   mi  mix mix x   ix  mix mix BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <table>
A   a   A   A   A   A   A   A   A   A   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   NOPUNCT 9   2   0   NUMBER  0   0   <table>

Subsequently, the table model classify all the text as <content>, 

1   1   1   1   1   1   1   1   1   1   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    1   NOPUNCT 9   2   0   NUMBER  1   0   <content>
/   /   /   /   /   /   /   /   /   /   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   NOPUNCT 9   2   0   NUMBER  0   0   <content>
5000    5000    5   50  500 5000    0   00  000 5000    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
of  of  o   of  of  of  f   of  of  of  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
stock   stock   s   st  sto stoc    k   ck  ock tock    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
solution    solution    s   so  sol solu    n   on  ion tion    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
mix mix m   mi  mix mix x   ix  mix mix BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
A   a   A   A   A   A   A   A   A   A   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   NOPUNCT 9   2   0   NUMBER  0   0   <content>
(   (   (   (   (   (   (   (   (   (   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   OPENBRACKET 9   2   0   NUMBER  0   0   <content>
Garvan  garvan  G   Ga  Gar Garv    n   an  van rvan    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
Institute   institute   I   In  Ins Inst    e   te  ute tute    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
of  of  o   of  of  of  f   of  of  of  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
Medical medical M   Me  Med Medi    l   al  cal ical    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
Research    research    R   Re  Res Rese    h   ch  rch arch    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
)   )   )   )   )   )   )   )   )   )   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   ENDBRACKET  9   2   0   NUMBER  0   0   <content>
and and a   an  and and d   nd  and and BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   2   0   NUMBER  0   0   <content>
2   2   2   2   2   2   2   2   2   2   BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    1   NOPUNCT 9   2   0   NUMBER  1   0   <content>
µL  µl  µ   µL  µL  µL  L   µL  µL  µL  BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
of  of  o   of  of  of  f   of  of  of  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
External    external    E   Ex  Ext Exte    l   al  nal rnal    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
RNA rna R   RN  RNA RNA A   NA  RNA RNA BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
Control control C   Co  Con Cont    l   ol  rol trol    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
Consortium  consortium  C   Co  Con Cons    m   um  ium tium    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   3   0   NUMBER  1   0   <content>
(   (   (   (   (   (   (   (   (   (   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   OPENBRACKET 9   3   0   NUMBER  0   0   <content>
ERCC    ercc    E   ER  ERC ERCC    C   CC  RCC ERCC    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
)   )   )   )   )   )   )   )   )   )   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   ENDBRACKET  9   3   0   NUMBER  0   0   <content>
spike   spike   s   sp  spi spik    e   ke  ike pike    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
-   -   -   -   -   -   -   -   -   -   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   HYPHEN  9   3   0   NUMBER  0   0   <content>
in  in  i   in  in  in  n   in  in  in  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
controls    controls    c   co  con cont    s   ls  ols rols    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
(   (   (   (   (   (   (   (   (   (   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   OPENBRACKET 9   3   0   NUMBER  0   0   <content>
ThermoFisher    thermofisher    T   Th  The Ther    r   er  her sher    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
Scientific  scientific  S   Sc  Sci Scie    c   ic  fic ific    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   COMMA   9   3   0   NUMBER  0   0   <content>
4456740 4456740 4   44  445 4456    0   40  740 6740    BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
)   )   )   )   )   )   )   )   )   )   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   ENDBRACKET  9   3   0   NUMBER  0   0   <content>
were    were    w   we  wer were    e   re  ere were    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
added   added   a   ad  add adde    d   ed  ded dded    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
to  to  t   to  to  to  o   to  to  to  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
12  12  1   12  12  12  2   12  12  12  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   3   0   NUMBER  1   0   <content>
µl  µl  µ   µl  µl  µl  l   µl  µl  µl  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
RNA rna R   RN  RNA RNA A   NA  RNA RNA BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
eluate  eluate  e   el  elu elua    e   te  ate uate    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   DOT 9   3   0   NUMBER  0   0   <content>
Genomic genomic G   Ge  Gen Geno    c   ic  mic omic    BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
DNA dna D   DN  DNA DNA A   NA  DNA DNA BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
was was w   wa  was was s   as  was was BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
removed removed r   re  rem remo    d   ed  ved oved    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
by  by  b   by  by  by  y   by  by  by  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
adding  adding  a   ad  add addi    g   ng  ing ding    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
1   1   1   1   1   1   1   1   1   1   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    1   NOPUNCT 9   3   0   NUMBER  1   0   <content>
μL  μl  μ   μL  μL  μL  L   μL  μL  μL  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
HL  hl  H   HL  HL  HL  L   HL  HL  HL  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
-   -   -   -   -   -   -   -   -   -   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   HYPHEN  9   3   0   NUMBER  0   0   <content>
dsDNase dsdnase d   ds  dsD dsDN    e   se  ase Nase    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
(   (   (   (   (   (   (   (   (   (   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   OPENBRACKET 9   3   0   NUMBER  0   0   <content>
ArcticZymes arcticzymes A   Ar  Arc Arct    s   es  mes ymes    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   COMMA   9   3   0   NUMBER  0   0   <content>
70800   70800   7   70  708 7080    0   00  800 0800    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
-   -   -   -   -   -   -   -   -   -   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   HYPHEN  9   3   0   NUMBER  0   0   <content>
202 202 2   20  202 202 2   02  202 202 BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
)   )   )   )   )   )   )   )   )   )   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   ENDBRACKET  9   3   0   NUMBER  0   0   <content>
and and a   an  and and d   nd  and and BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
1   1   1   1   1   1   1   1   1   1   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    1   NOPUNCT 9   3   0   NUMBER  1   0   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   DOT 9   3   0   NUMBER  0   0   <content>
6   6   6   6   6   6   6   6   6   6   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    1   NOPUNCT 9   3   0   NUMBER  1   0   <content>
µL  µl  µ   µL  µL  µL  L   µL  µL  µL  BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   3   0   NUMBER  0   0   <content>
reaction    reaction    r   re  rea reac    n   on  ion tion    BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
buffer  buffer  b   bu  buf buff    r   er  fer ffer    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
(   (   (   (   (   (   (   (   (   (   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   OPENBRACKET 9   4   0   NUMBER  0   0   <content>
ArcticZymes arcticzymes A   Ar  Arc Arct    s   es  mes ymes    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   COMMA   9   4   0   NUMBER  0   0   <content>
66001   66001   6   66  660 6600    1   01  001 6001    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
)   )   )   )   )   )   )   )   )   )   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   ENDBRACKET  9   4   0   NUMBER  0   0   <content>
to  to  t   to  to  to  o   to  to  to  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
12  12  1   12  12  12  2   12  12  12  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   4   0   NUMBER  1   0   <content>
µL  µl  µ   µL  µL  µL  L   µL  µL  µL  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
RNA rna R   RN  RNA RNA A   NA  RNA RNA BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
eluate  eluate  e   el  elu elua    e   te  ate uate    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   COMMA   9   4   0   NUMBER  0   0   <content>
10  10  1   10  10  10  0   10  10  10  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   4   0   NUMBER  1   0   <content>
min min m   mi  min min n   in  min min BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
incubation  incubation  i   in  inc incu    n   on  ion tion    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
at  at  a   at  at  at  t   at  at  at  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
37  37  3   37  37  37  7   37  37  37  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   4   0   NUMBER  1   0   <content>
°C  °c  °   °C  °C  °C  C   °C  °C  °C  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   COMMA   9   4   0   NUMBER  0   0   <content>
followed    followed    f   fo  fol foll    d   ed  wed owed    BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
by  by  b   by  by  by  y   by  by  by  BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
5   5   5   5   5   5   5   5   5   5   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    1   NOPUNCT 9   4   0   NUMBER  1   0   <content>
min min m   mi  min min n   in  min min BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
incubation  incubation  i   in  inc incu    n   on  ion tion    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
at  at  a   at  at  at  t   at  at  at  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
55  55  5   55  55  55  5   55  55  55  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
°C  °c  °   °C  °C  °C  C   °C  °C  °C  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   DOT 9   4   0   NUMBER  0   0   <content>
RNA rna R   RN  RNA RNA A   NA  RNA RNA BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
was was w   wa  was was s   as  was was BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
stored  stored  s   st  sto stor    d   ed  red ored    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
at  at  a   at  at  at  t   at  at  at  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
-   -   -   -   -   -   -   -   -   -   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   HYPHEN  9   4   0   NUMBER  0   0   <content>
80  80  8   80  80  80  0   80  80  80  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
°C  °c  °   °C  °C  °C  C   °C  °C  °C  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
and and a   an  and and d   nd  and and BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
thawed  thawed  t   th  tha thaw    d   ed  wed awed    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
on  on  o   on  on  on  n   on  on  on  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
ice ice i   ic  ice ice e   ce  ice ice BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
immediately immediately i   im  imm imme    y   ly  ely tely    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
before  before  b   be  bef befo    e   re  ore fore    BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
library library l   li  lib libr    y   ry  ary rary    BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
preparation preparation p   pr  pre prep    n   on  ion tion    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   4   0   NUMBER  0   0   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   DOT 9   4   0   NUMBER  0   0   <content>
Messenger   messenger   M   Me  Mes Mess    r   er  ger nger    BLOCKSTART  LINESTART   LINEINDENT  NEWFONT SAMEFONTSIZE    1   0   INITCAP NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
RNA rna R   RN  RNA RNA A   NA  RNA RNA BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    1   0   ALLCAP  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
capture capture c   ca  cap capt    e   re  ure ture    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    1   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
library library l   li  lib libr    y   ry  ary rary    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    1   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
preparation preparation p   pr  pre prep    n   on  ion tion    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    1   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    1   0   ALLCAP  NODIGIT 1   COMMA   9   5   0   NUMBER  0   0   <content>
sequencing  sequencing  s   se  seq sequ    g   ng  ing cing    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    1   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    1   0   ALLCAP  NODIGIT 1   COMMA   9   5   0   NUMBER  0   0   <content>
and and a   an  and and d   nd  and and BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    1   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
quantification  quantification  q   qu  qua quan    n   on  ion tion    BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    1   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
MRNA    mrna    M   MR  MRN MRNA    A   NA  RNA MRNA    BLOCKSTART  LINESTART   LINEINDENT  NEWFONT SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
capture capture c   ca  cap capt    e   re  ure ture    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
library library l   li  lib libr    y   ry  ary rary    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
preparation preparation p   pr  pre prep    n   on  ion tion    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
in  in  i   in  in  in  n   in  in  in  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
pan pan p   pa  pan pan n   an  pan pan BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
-   -   -   -   -   -   -   -   -   -   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   HYPHEN  9   5   0   NUMBER  0   0   <content>
cancer  cancer  c   ca  can canc    r   er  cer ncer    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
and and a   an  and and d   nd  and and BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
three   three   t   th  thr thre    e   ee  ree hree    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
-   -   -   -   -   -   -   -   -   -   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   HYPHEN  9   5   0   NUMBER  0   0   <content>
cancer  cancer  c   ca  can canc    r   er  cer ncer    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
cohorts cohorts c   co  coh coho    s   ts  rts orts    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
started started s   st  sta star    d   ed  ted rted    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
from    from    f   fr  fro from    m   om  rom from    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
8   8   8   8   8   8   8   8   8   8   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    1   NOPUNCT 9   5   0   NUMBER  1   0   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   DOT 9   5   0   NUMBER  0   0   <content>
5   5   5   5   5   5   5   5   5   5   BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    1   NOPUNCT 9   5   0   NUMBER  1   0   <content>
µL  µl  µ   µL  µL  µL  L   µL  µL  µL  BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
DNase   dnase   D   DN  DNa DNas    e   se  ase Nase    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
treated treated t   tr  tre trea    d   ed  ted ated    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
RNA rna R   RN  RNA RNA A   NA  RNA RNA BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
eluate  eluate  e   el  elu elua    e   te  ate uate    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   DOT 9   5   0   NUMBER  0   0   <content>
cDNA    cdna    c   cD  cDN cDNA    A   NA  DNA cDNA    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
synthesis   synthesis   s   sy  syn synt    s   is  sis esis    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
was was w   wa  was was s   as  was was BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
performed   performed   p   pe  per perf    d   ed  med rmed    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
using   using   u   us  usi usin    g   ng  ing sing    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
TruSeq  truseq  T   Tr  Tru TruS    q   eq  Seq uSeq    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
RNA rna R   RN  RNA RNA A   NA  RNA RNA BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
Library library L   Li  Lib Libr    y   ry  ary rary    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
Prep    prep    P   Pr  Pre Prep    p   ep  rep Prep    BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   5   0   NUMBER  0   0   <content>
for for f   fo  for for r   or  for for BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
Enrichment  enrichment  E   En  Enr Enri    t   nt  ent ment    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
(   (   (   (   (   (   (   (   (   (   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   OPENBRACKET 9   6   0   NUMBER  0   0   <content>
Illumina    illumina    I   Il  Ill Illu    a   na  ina mina    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   COMMA   9   6   0   NUMBER  0   0   <content>
20020189    20020189    2   20  200 2002    9   89  189 0189    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
)   )   )   )   )   )   )   )   )   )   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   ENDBRACKET  9   6   0   NUMBER  0   0   <content>
as  as  a   as  as  as  s   as  as  as  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
previously  previously  p   pr  pre prev    y   ly  sly usly    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
described   described   d   de  des desc    d   ed  bed ibed    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
22  22  2   22  22  22  2   22  22  22  BLOCKIN LINEIN  LINEINDENT  NEWFONT LOWERFONT   0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   6   0   NUMBER  1   1   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKIN LINEIN  LINEINDENT  NEWFONT HIGHERFONT  0   0   ALLCAP  NODIGIT 1   DOT 9   6   0   NUMBER  0   0   <content>
Briefly briefly B   Br  Bri Brie    y   ly  fly efly    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   COMMA   9   6   0   NUMBER  0   0   <content>
RNA rna R   RN  RNA RNA A   NA  RNA RNA BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
was was w   wa  was was s   as  was was BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
fragmented  fragmented  f   fr  fra frag    d   ed  ted nted    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   COMMA   9   6   0   NUMBER  0   0   <content>
and and a   an  and and d   nd  and and BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
first   first   f   fi  fir firs    t   st  rst irst    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
strand  strand  s   st  str stra    d   nd  and rand    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
cDNA    cdna    c   cD  cDN cDNA    A   NA  DNA cDNA    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
was was w   wa  was was s   as  was was BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
generated   generated   g   ge  gen gene    d   ed  ted ated    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
using   using   u   us  usi usin    g   ng  ing sing    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
random  random  r   ra  ran rand    m   om  dom ndom    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
priming priming p   pr  pri prim    g   ng  ing ming    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   DOT 9   6   0   NUMBER  0   0   <content>
RNA rna R   RN  RNA RNA A   NA  RNA RNA BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
templates   templates   t   te  tem temp    s   es  tes ates    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
were    were    w   we  wer were    e   re  ere were    BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
subsequently    subsequently    s   su  sub subs    y   ly  tly ntly    BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
removed removed r   re  rem remo    d   ed  ved oved    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
and and a   an  and and d   nd  and and BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
replaced    replaced    r   re  rep repl    d   ed  ced aced    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
by  by  b   by  by  by  y   by  by  by  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
a   a   a   a   a   a   a   a   a   a   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 1   NOPUNCT 9   6   0   NUMBER  0   0   <content>
newly   newly   n   ne  new newl    y   ly  wly ewly    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
synthesized synthesized s   sy  syn synt    d   ed  zed ized    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
second  second  s   se  sec seco    d   nd  ond cond    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
strand  strand  s   st  str stra    d   nd  and rand    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
of  of  o   of  of  of  f   of  of  of  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
cDNA    cdna    c   cD  cDN cDNA    A   NA  DNA cDNA    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   DOT 9   6   0   NUMBER  0   0   <content>
AMPure  ampure  A   AM  AMP AMPu    e   re  ure Pure    BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   6   0   NUMBER  0   0   <content>
XP  xp  X   XP  XP  XP  P   XP  XP  XP  BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
beads   beads   b   be  bea bead    s   ds  ads eads    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
(   (   (   (   (   (   (   (   (   (   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   OPENBRACKET 9   7   0   NUMBER  0   0   <content>
Beckman beckman B   Be  Bec Beck    n   an  man kman    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
Coulter coulter C   Co  Cou Coul    r   er  ter lter    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
Life    life    L   Li  Lif Life    e   fe  ife Life    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
Sciences    sciences    S   Sc  Sci Scie    s   es  ces nces    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   COMMA   9   7   0   NUMBER  0   0   <content>
A63881  a63881  A   A6  A63 A638    1   81  881 3881    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  CONTAINSDIGITS  0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
)   )   )   )   )   )   )   )   )   )   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   ENDBRACKET  9   7   0   NUMBER  0   0   <content>
were    were    w   we  wer were    e   re  ere were    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
used    used    u   us  use used    d   ed  sed used    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
for for f   fo  for for r   or  for for BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
purifying   purifying   p   pu  pur puri    g   ng  ing ying    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
the the t   th  the the e   he  the the BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
blunt   blunt   b   bl  blu blun    t   nt  unt lunt    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
-   -   -   -   -   -   -   -   -   -   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   HYPHEN  9   7   0   NUMBER  0   0   <content>
ended   ended   e   en  end ende    d   ed  ded nded    BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
double  double  d   do  dou doub    e   le  ble uble    BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
stranded    stranded    s   st  str stra    d   ed  ded nded    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
cDNA    cdna    c   cD  cDN cDNA    A   NA  DNA cDNA    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   DOT 9   7   0   NUMBER  0   0   <content>
30  30  3   30  30  30  0   30  30  30  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   7   0   NUMBER  1   0   <content>
μL  μl  μ   μL  μL  μL  L   μL  μL  μL  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
cDNA    cdna    c   cD  cDN cDNA    A   NA  DNA cDNA    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
of  of  o   of  of  of  f   of  of  of  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
each    each    e   ea  eac each    h   ch  ach each    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
sample  sample  s   sa  sam samp    e   le  ple mple    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
was was w   wa  was was s   as  was was BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
then    then    t   th  the then    n   en  hen then    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
used    used    u   us  use used    d   ed  sed used    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
as  as  a   as  as  as  s   as  as  as  BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
input   input   i   in  inp inpu    t   ut  put nput    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
for for f   fo  for for r   or  for for BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
Illumina    illumina    I   Il  Ill Illu    a   na  ina mina    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
DNA dna D   DN  DNA DNA A   NA  DNA DNA BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
Prep    prep    P   Pr  Pre Prep    p   ep  rep Prep    BLOCKSTART  LINESTART   LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
with    with    w   wi  wit with    h   th  ith with    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
Enrichment  enrichment  E   En  Enr Enri    t   nt  ent ment    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
(   (   (   (   (   (   (   (   (   (   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   OPENBRACKET 9   7   0   NUMBER  0   0   <content>
previously  previously  p   pr  pre prev    y   ly  sly usly    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
Nextera nextera N   Ne  Nex Next    a   ra  era tera    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
Flex    flex    F   Fl  Fle Flex    x   ex  lex Flex    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
for for f   fo  for for r   or  for for BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
Enrichment  enrichment  E   En  Enr Enri    t   nt  ent ment    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
;   ;   ;   ;   ;   ;   ;   ;   ;   ;   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   PUNCT   9   7   0   NUMBER  0   0   <content>
Illumina    illumina    I   Il  Ill Illu    a   na  ina mina    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   INITCAP NODIGIT 0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
,   ,   ,   ,   ,   ,   ,   ,   ,   ,   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   COMMA   9   7   0   NUMBER  0   0   <content>
20025524    20025524    2   20  200 2002    4   24  524 5524    BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    0   NOPUNCT 9   7   0   NUMBER  0   0   <content>
)   )   )   )   )   )   )   )   )   )   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   ENDBRACKET  9   7   0   NUMBER  0   0   <content>
.   .   .   .   .   .   .   .   .   .   BLOCKEND    LINEEND LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   DOT 9   7   0   NUMBER  0   0   <content>

and the incomplete table is then tossed away.

I wonder whether it would be possible to detect false positive tables by the related classes and convert them as <paragraph>

PDF: pub.1158465915.pdf

lfoppiano commented 1 day ago

I'm delving into this issue, looking at

https://github.com/kermitt2/grobid/blob/37dcec17b71ded30d7d4424a58098f36e2bc2bea/grobid-core/src/main/java/org/grobid/core/data/Table.java#L312

it seems that the tables are validated before being postprocessed, however the tables that do not pass the validation are not marked and dealt, somehow, I wonder if those should be just marked as paragraph and returned as fulltext. 🤔

My plan is to take those tables and reset the classification into the fulltext. It's probably better to have a table mangled in the <paragraph> rather than having text missing from the output 🤔

lfoppiano commented 1 day ago

Regarding this issue, another worrying thing is that <table> does not have the initial I- prefix: 

(   (   (   (   (   (   (   (   (   (   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   ALLCAP  NODIGIT 1   OPENBRACKET 9   2   0   NUMBER  0   0   I-<citation_marker>
1   1   1   1   1   1   1   1   1   1   BLOCKIN LINEIN  LINEINDENT  SAMEFONT    SAMEFONTSIZE    0   0   NOCAPS  ALLDIGIT    1   NOPUNCT 9   2   0   NUMBER  1   0   <table>